Journal Publications Using DSI Studio

Top 30 DSI Studio Citing Journals by Numbers of Publications

Top 20 Universities and Hospitals Visiting DSI Studio Website in the Past 100 Days ‎‎‎‎‎‎‎‎‎‎‎‎‎‎‎‎(Generated Automatically by Google Analytics Report)‎‎‎‎‎‎‎‎‎‎‎‎‎‎‎‎

How to cite DSI Studio in journal publication?

I would suggest citing the method you used in your publication (e.g. reconstruction method or tracking algorithm) and mentioning that the data were analyzed using DSI Studio ( For example:

Generalized q-sampling imaging (GQI)
GQI is a model-free method that calculates the orientational distribution of the density of diffusing water.
Yeh, Fang-Cheng, Van Jay Wedeen, and Wen-Yih Isaac Tseng, "Generalized-sampling imaging."Medical Imaging, IEEE Transactions on 29.9 (2010): 1626-1635.

Q-space diffeormophic reconstruction (QSDR)
QSDR is a model-free method that calculates the orientational distribution of the density of diffusing water in a standard space.
Yeh, Fang-Cheng, and Wen-Yih Isaac Tseng, "NTU-90: a high angular resolution brain atlas constructed by q-space diffeomorphic reconstruction." Neuroimage 58.1 (2011): 91-99. [pdf]

Restricted diffusion imaging (RDI)
RDI is a model-free method that calculates the density of diffusing spins restricted within a given displacement distance.
Yeh, Fang-Cheng, Li Liu, T. Kevin Hitchens, and Yijen L. Wu, "Mapping Immune Cell Infiltration Using Restricted Diffusion MRI", Magn Reson Med. accepted, (2016) [pdf]

Deterministic tracking algorithm
The fiber tracking algorithm implemented in DSI Studio is a generalized version of the deterministic tracking algorithm that uses quantitative anisotropy as the termination index.
Yeh, Fang-Cheng, et al. "Deterministic diffusion fiber tracking improved by quantitative anisotropy." (2013): e80713. PLoS ONE 8(11): e80713. doi:10.1371/journal.pone.0080713 [link]

Group connectometry
Group connectometry is atlas-based analysis method that tracks association/correlation/group difference along major fiber pathways and statistically tests the findings using false discovery rate.
Yeh, Fang-Cheng, David Badre, and Timothy Verstynen. "Connectometry: A statistical approach harnessing the analytical potential of the local connectome." NeuroImage 125 (2016): 162-171. [pdf]

Individual connectometry
Individual connectometry is atlas-based analysis method that tracks the deviant pathways of one individual (e.g. a patient) by comparing subject's data with a normal population.
Yeh, Fang-Cheng, Pei-Fang Tang, and Wen-Yih Isaac Tseng. "Diffusion MRI connectometry automatically reveals affected fiber pathways in individuals with chronic stroke." NeuroImage: Clinical 2 (2013): 912-921. [link]

Complete list of journal publications using DSI Studio


  • Lischke, Alexander, Martin Domin, Harald J. Freyberger, Hans J. Grabe, Renate Mentel, Dorothee Bernheim, and Martin Lotze. "Structural Alterations in the Corpus Callosum Are Associated with Suicidal Behavior in Women with Borderline Personality Disorder." Frontiers in Human Neuroscience 11 (2017): 196. 
  • Ashourvan, Arian, Qawi K. Telesford, Timothy Verstynen, Jean M. Vettel, and Danielle S. Bassett. "Multi-scale detection of hierarchical community architecture in structural and functional brain networks." arXiv preprint arXiv:1704.05826 (2017).
  • Merabet, Lotfi B., D. Luisa Mayer, Corinna M. Bauer, Darick Wright, and Barry S. Kran. "Disentangling How the Brain is “Wired” in Cortical/Cerebral Visual Impairment (CVI)." In Seminars in Pediatric Neurology. WB Saunders, 2017.
  • Horn, Andreas, Wolf‐Julian Neumann, Katharina Degen, Gerd‐Helge Schneider, and Andrea A. Kühn. "Toward an electrophysiological “sweet spot” for deep brain stimulation in the subthalamic nucleus." Human Brain Mapping (2017).
  • Wei, Peng-Hu, Zhi-Qi Mao, Fei Cong, Fang-Cheng Yeh, Bo Wang, Zhi-Pei Ling, Shu-Li Liang, Lin Chen, and Xin-Guang Yu. "In vivo visualization of connections among revised Papez circuit hubs using full q-space diffusion spectrum imaging tractography." Neuroscience (2017).
  • Zajac, Lauren, Bang-Bon Koo, Corinna M. Bauer, and Ron Killiany. "Seed Location Impacts Whole-Brain Structural Network Comparisons between Healthy Elderly and Individuals with Alzheimer’s Disease." Brain Sciences 7, no. 4 (2017): 37.
  • Yokota, Hajime, Koji Sakai, Jun Tazoe, Mariko Goto, Hiroshi Imai, Satoshi Teramukai, and Kei Yamada. "Clinical feasibility of simultaneous multi-slice imaging with blipped-CAIPI for diffusion-weighted imaging and diffusion-tensor imaging of the brain." Acta Radiologica (2017): 0284185117692171.
  • Yin, Yan, Eric Li, George Sun, Hong Q. Yan, Lesley M. Foley, Liwia A. Andrzejczuk, Insiya Y. Attarwala et al. "Effects of DHA on Hippocampal Autophagy and Lysosome Function After Traumatic Brain Injury." Molecular Neurobiology (2017): 1-17.
  • Gangolli, M., Holleran, L., Kim, J. H., Stein, T. D., Alvarez, V., McKee, A. C., & Brody, D. L. (2017). Quantitative validation of a nonlinear histology-MRI coregistration method using Generalized Q-sampling Imaging in complex human cortical white matter. NeuroImage.
  • Madden, David J., Emily L. Parks, Catherine W. Tallman, Maria A. Boylan, David A. Hoagey, Sally B. Cocjin, Lauren E. Packard et al. "Sources of Disconnection in Neurocognitive Aging: Cerebral White Matter Integrity, Resting-state Functional Connectivity, and White Matter Hyperintensity Volume." Neurobiology of Aging (2017).
  • Lazar, Mariana. "Working Memory: How Important Is White Matter?." The Neuroscientist 23, no. 2 (2017): 197-210.
  • Narayana, Ponnada A. "White matter changes in patients with mild traumatic brain injury: MRI perspective." Concussion 0 (2017): CNC35.
  • Weng, Jun-Cheng, Te-Wei Kao, Guo-Joe Huang, Yeu-Sheng Tyan, Hsien-Chun Tseng, and Ming-Chou Ho. "Evaluation of structural connectivity changes in betel-quid chewers using generalized q-sampling MRI." Psychopharmacology (2017): 1-11.
  • Bauer, Corinna M., Gabriella V. Hirsch, Lauren Zajac, Bang-Bon Koo, Olivier Collignon, and Lotfi B. Merabet. "Multimodal MR-imaging reveals large-scale structural and functional connectivity changes in profound early blindness." PloS one 12, no. 3 (2017): e0173064.
  • Burks, Joshua D., Lillian B. Boettcher, Andrew K. Conner, Chad A. Glenn, Phillip A. Bonney, Cordell M. Baker, Robert G. Briggs et al. "White matter connections of the inferior parietal lobule: A study of surgical anatomy." Brain and Behavior (2017).
  • Chen, Yi-An, and Tsung-Ren Huang. "Multistability of the Brain Network for Self-other Processing." Scientific Reports 7 (2017): 43313.
  • Wu, Cheng-Han, Yu-Jen Chen, Mu-Hui Wang, Ling-Ling Chiou, Wen-Yih Isaac Tseng, and Hsuan-Shu Lee. "Diffusion tensor tractography reveals muscle reconnection during axolotl limb regeneration." PloS one 12, no. 3 (2017): e0173425.
  • Gao, Yurui, Kurt G. Schilling, Iwona Stepniewska, Andrew J. Plassard, Ann S. Choe, Xia Li, Bennett A. Landman, and Adam W. Anderson. "Tests of cortical parcellation based on white matter connectivity using Diffusion Tensor Imaging." NeuroImage (2017).
  • Monnot, Cyril, Xiaoqun Zhang, Sahar Nikkhou-Aski, Peter Damberg, and Per Svenningsson. "Asymmetric dopaminergic degeneration and levodopa alter functional corticostriatal connectivity bilaterally in experimental parkinsonism." Experimental Neurology (2017).
  • Holleran, Laurena, Joong Hee Kim, Mihika Gangolli, Thor Stein, Victor Alvarez, Ann McKee, and David L. Brody. "Axonal disruption in white matter underlying cortical sulcus tau pathology in chronic traumatic encephalopathy." Acta Neuropathologica (2017): 1-14.
  • Wei, Peng-Hu, Zhi-Qi Mao, Fei Cong, Bo Wang, Zhi-Pei Ling, Shu-Li Liang, and Xin-Guang Yu. "Connection between bilateral temporal regions: Tractography using human connectome data and diffusion spectrum imaging." Journal of Clinical Neuroscience (2017).
  • Rahmani, Farzaneh, and Mohammad Hadi Aarabi. "Does apolipoprotein A1 predict microstructural changes in subgenual cingulum in early Parkinson?." Journal of Neurology: 1-10.
  • Fan, Qiuyun, Aapo Nummenmaa, Jonathan R. Polimeni, Thomas Witzel, Susie Y. Huang, Van J. Wedeen, Bruce R. Rosen, and Lawrence L. Wald. "HIgh b-value and high Resolution Integrated Diffusion (HIBRID) imaging." NeuroImage (2017).
  • Kim, Jason, Jonathan M. Soffer, Ari E. Kahn, Jean M. Vettel, Fabio Pasqualetti, and Danielle S. Basset. "Topological Principles of Control in Dynamical Network Systems." arXiv preprint arXiv:1702.00354 (2017).
  • Horn, Andreas, Andrea A. Kühn, Angela Merkl, Ludy Shih, Ron Alterman, and Michael Fox. "Probabilistic conversion of neurosurgical DBS electrode coordinates into MNI space." NeuroImage (2017).
  • Calloni, Sonia F., Julie S. Cohen, Avner Meoded, Jane Juusola, Fabio M. Triulzi, Thierry AGM Huisman, Andrea Poretti, and Ali Fatemi. "Compound Heterozygous Variants in ROBO1 Cause a Neurodevelopmental Disorder with Absence of Transverse Pontine Fibers and Thinning of the Anterior Commissure and Corpus Callosum." Pediatric Neurology (2017).
  • Delaparte, Lauren, Fang-Cheng Yeh, Phil Adams, Ashley Malchow, Madhukar H. Trivedi, Maria A. Oquendo, Thilo Deckersbach et al. "A comparison of structural connectivity in anxious depression versus non-anxious depression." Journal of Psychiatric Research (2017).
  • Shih, Y. C., C. E. Tseng, F-H. Lin, H. H. Liou, and W. Y. I. Tseng. "Hippocampal Atrophy Is Associated with Altered Hippocampus–Posterior Cingulate Cortex Connectivity in Mesial Temporal Lobe Epilepsy with Hippocampal Sclerosis." American Journal of Neuroradiology (2017).
  • Bolsterlee, Bart, Arkiev D'Souza, Simon C. Gandevia, and Robert D. Herbert. "How does passive lengthening change the architecture of the human medial gastrocnemius muscle?." Journal of Applied Physiology (2017): jap-00976.
  • Jalbrzikowski, Maria, Bart Larsen, Michael N. Hallquist, William Foran, Finnegan Calabro, and Beatriz Luna. "Development of White Matter Microstructure and Intrinsic Functional Connectivity Between the Amygdala and Ventromedial Prefrontal Cortex: Associations with Anxiety and Depression." Biological Psychiatry (2017).
  • Tsai, Ching-Yi, Chia-Hao Su, Julie YH Chan, and Samuel HH Chan. "Nitrosative Stress-Induced Disruption of Baroreflex Neural Circuits in a Rat Model of Hepatic Encephalopathy: A DTI Study." Scientific Reports 7 (2017): 40111.
  • Xu, Tiantian, Yuanjing Feng, Ye Wu, Qingrun Zeng, Jun Zhang, Jianzhong He, and Qichuan Zhuge. "A Novel Richardson-Lucy Model with Dictionary Basis and Spatial Regularization for Isolating Isotropic Signals." PloS one 12, no. 1 (2017): e0168864.
  • Taylor, Peter N., Yujiang Wang, and Marcus Kaiser. "Within brain area tractography suggests local modularity using high resolution connectomics." Scientific Reports 7 (2017): 39859.
  • Scholl, Benjamin, Johnathan Rylee, Jeffrey J. Luci, Nicholas J. Priebe, and Jeff Padberg. "Orientation selectivity in the visual cortex of the nine-banded armadillo." Journal of Neurophysiology (2017): jn-00851. 
  • Alexandroni, Guy, Gali Zimmerman Moreno, Nir Sochen, and Hayit Greenspan. "The fiber-density-coreset for redundancy reduction in huge fiber-sets." NeuroImage 146 (2017): 246-256.
  • Celtikci, Emrah, Pinar Celtikci, David Tiago Fernandes-Cabral, Murat Ucar, Juan Carlos Fernandez-Miranda, and Alp Ozgun Borcek. "High-Definition Fiber Tractography in Evaluation and Surgical Planning of Thalamopeduncular Pilocytic Astrocytomas in Pediatric Population: Case Series and Review of Literature." World Neurosurgery 98 (2017): 463-469.
  • Yeh, Fang-Cheng, Li Liu, T. Kevin Hitchens, and Yijen L. Wu, "Mapping Immune Cell Infiltration Using Restricted Diffusion MRI", Magn Reson Med. 77:603–612 (2017) 
  • Chiang, Huey‐Ling, Yu‐Jen Chen, Hsiang‐Yuan Lin, Wen‐Yih Isaac Tseng, and Susan Shur‐Fen Gau. "Disorder‐Specific Alteration in White Matter Structural Property in Adults With Autism Spectrum Disorder Relative to Adults With ADHD and Adult Controls." Human brain mapping 38, no. 1 (2017): 384-395. 
  • Muraskin, Jordan, Jason Sherwin, Gregory Lieberman, Javier O. Garcia, Timothy Verstynen, Jean M. Vettel, and Paul Sajda. "Fusing Multiple Neuroimaging Modalities to Assess Group Differences in Perception–Action Coupling." Proceedings of the IEEE 105, no. 1 (2017): 83-100. 
  • Baydin, Serhat, Abuzer Gungor, Necmettin Tanriover, Oguz Baran, Erik H. Middlebrooks, and Albert L. Rhoton. "Fiber tracts of the medial and inferior surfaces of the cerebrum." World neurosurgery 98 (2017): 34-49.
  • Wei, Peng-Hu, Fei Cong, Ge Chen, Ming-Chu Li, Xin-Guang Yu, and Yu-Hai Bao. "Neuronavigation Based on Track Density Image Extracted from Deterministic High-Definition Fiber Tractography." World neurosurgery 98 (2017): 880-e9.
  • Berns, Gregory S., and Ken WS Ashwell. "Reconstruction of the Cortical Maps of the Tasmanian Tiger and Comparison to the Tasmanian Devil." PloS one 12, no. 1 (2017): e0168993.
  • Griffis, Joseph C., Rodolphe Nenert, Jane B. Allendorfer, and Jerzy P. Szaflarski. "Damage to white matter bottlenecks contributes to language impairments after left hemispheric stroke." NeuroImage: Clinical 14 (2017): 552-565.
  • Zhao, Hanshu, Rachel Nepomuceno, Xin Gao, Lesley M. Foley, Shaoxia Wang, Gulnaz Begum, Wen Zhu et al. "Deletion of the WNK3-SPAK kinase complex in mice improves radiographic and clinical outcomes in malignant cerebral edema after ischemic stroke." Journal of Cerebral Blood Flow & Metabolism 37, no. 2 (2017): 550-563.
  • Liu, Kai, Teng Zhang, Winnie CW Chu, Vincent CT Mok, Defeng Wang, and Lin Shi. "Group comparison of cortical fiber connectivity map: An application between post-stroke patients and healthy subjects." Neuroscience 344 (2017): 15-24.


  • Lo, Yu‐Chun, Yu‐Jen Chen, Yung‐Chin Hsu, Wen‐Yih Isaac Tseng, and Susan Shur‐Fen Gau. "Reduced tract integrity of the model for social communication is a neural substrate of social communication deficits in autism spectrum disorder." Journal of Child Psychology and Psychiatry (2016).
  • Solé-Padullés, Cristina, Josefina Castro-Fornieles, Elena de la Serna, Vanessa Sánchez-Gistau, Soledad Romero, Olga Puig, Anna Calvo, Nuria Bargalló, Inmaculada Baeza, and Gisela Sugranyes. "Intrinsic functional connectivity of fronto-temporal networks in adolescents with early psychosis." European Child & Adolescent Psychiatry (2016): 1-11.
  • Seáñez-González, Ismael, Camilla Pierella, Ali Farshchiansadegh, Elias B. Thorp, Xue Wang, Todd Parrish, and Ferdinando A. Mussa-Ivaldi. "Body-Machine Interfaces after Spinal Cord Injury: Rehabilitation and Brain Plasticity." Brain Sciences 6, no. 4 (2016): 61.
  • Chen, Shu-Tian, Jen-Tsung Yang, Mei-Yu Yeh, Hsu-Huei Weng, Chih-Feng Chen, and Yuan-Hsiung Tsai. "Using Diffusion Tensor Imaging to Evaluate Microstructural Changes and Outcomes after Radiofrequency Rhizotomy of Trigeminal Nerves in Patients with Trigeminal Neuralgia." PLOS ONE 11, no. 12 (2016): e0167584.
  • Zolal, Amir, Stephan B. Sobottka, Dino Podlesek, Jennifer Linn, Bernhard Rieger, Tareq A. Juratli, Gabriele Schackert, and Hagen H. Kitzler. "Comparison of probabilistic and deterministic fiber tracking of cranial nerves." Journal of Neurosurgery (2016): 1-9.
  • Medaglia, John D., Weiyu Huang, Elisabeth A. Karuza, Sharon L. Thompson-Schill, Alejandro Ribeiro, and Danielle S. Bassett. "Functional Alignment with Anatomical Networks is Associated with Cognitive Flexibility." arXiv preprint arXiv:1611.08751 (2016).
  • Ansari, Mina, Farzaneh Rahmani, Mahsa Dolatshahi, Atefe Pooyan, and Mohammad Hadi Aarabi. "Brain pathway differences between Parkinson’s disease patients with and without REM sleep behavior disorder." Sleep and Breathing (2016): 1-7.
  • Raval, Shailesh B., Tiejun Zhao, Narayanan Krishnamurthy, Tales Santini, Cynthia Britton, Vijay S. Gorantla, and Tamer S. Ibrahim. "Ultra‐high‐field RF coil development for evaluating upper extremity imaging applications."  NMR in Biomedicine 29, no. 12 (2016): 1768-1779.
  • Tang, Evelyn, Chad Giusti, Graham Baum, Shi Gu, Eli Pollock, Ari E. Kahn, David Roalf et al. "A developmental arc of white matter supporting a growing diversity of brain dynamics." arXiv preprint arXiv:1607.01010 (2016).
  • Griffis, Joseph C., Rodolphe Nenert, Jane B. Allendorfer, and Jerzy P. Szaflarski. "Parallel ICA reveals linked patterns of structural damage and fMRI language task activation in chronic post-stroke aphasia." arXiv preprint arXiv:1610.04201(2016).
  • Muldoon SF, Pasqualetti F, Gu S, Cieslak M, Grafton ST, Vettel JM, et al. "Stimulation-Based Control of Dynamic Brain Networks." PLoS Comput Biol 12(9): e1005076. doi:10.1371/journal.pcbi.1005076 (2016)
  • Wen, Ming-Ching, Hannah SE Heng, Samuel YE Ng, Louis CS Tan, Ling Ling Chan, and Eng King Tan. "White matter microstructural characteristics in newly diagnosed Parkinson’s disease: An unbiased whole-brain study." Scientific Reports 6 (2016): 35601.
  • Wu, Yupeng, Dandan Sun, Yong Wang, and Yibao Wang. "Subcomponents and Connectivity of the Inferior Fronto-Occipital Fasciculus Revealed by Diffusion Spectrum Imaging Fiber Tracking."Frontiers in Neuroanatomy 10 (2016): 88. 
  • Grigorian, Anahit, Larissa McKetton, and Keith A. Schneider. "Measuring Connectivity in the Primary Visual Pathway in Human Albinism Using Diffusion Tensor Imaging and Tractography." JoVE (Journal of Visualized Experiments) 114 (2016): e53759-e53759.
  • Molet, Jenny, Pamela M. Maras, Eli Kinney‐Lang, Neil G. Harris, Faisal Rashid, Autumn S. Ivy, Ana Solodkin, Andre Obenaus, and Tallie Z. Baram. "MRI uncovers disrupted hippocampal microstructure that underlies memory impairments after early‐life adversity." Hippocampus 26, no. 12 (2016): 1618-1632.
  • Ismail, Abdol Aziz O. Ould, Ghoncheh Amouzandeh, and Samuel C. Grant. "Structural connectivity within neural ganglia: A default small-world network." Neuroscience 337 (2016): 276-284. 
  • Wu, Yupeng, Dandan Sun, Yong Wang, Yibao Wang, and Shaowu Ou. "Segmentation of the cingulum bundle in the human brain: a new perspective based on DSI tractography and fiber dissection study." Frontiers in Neuroanatomy 10 (2016).
  • Burks, Joshua D., Phillip A. Bonney, Andrew K. Conner, Chad A. Glenn, Robert G. Briggs, James D. Battiste, Tressie McCoy, Daniel L. O'Donoghue, Dee H. Wu, and Michael E. Sughrue. "A method for safely resecting anterior butterfly gliomas: the surgical anatomy of the default mode network and the relevance of its preservation." Journal of Neurosurgery (2016): 1-17.
  • Grover, Vijay PB, Louise Southern, Jessica K. Dyson, Jin Un Kim, Mary ME Crossey, Marzena Wylezinska‐Arridge, Nayna Patel et al. "Early primary biliary cholangitis is characterised by brain abnormalities on cerebral magnetic resonance imaging." Alimentary pharmacology & therapeutics 44, no. 9 (2016): 936-945.
  • Yeh, Fang-Cheng, and Timothy D. Verstynen. "Converting Multi-shell and Diffusion Spectrum Imaging to High Angular Resolution Diffusion Imaging." Frontiers in Neuroscience 10 (2016): 418.
  • Lichenstein, Sarah, James HBS Bishop, Timothy D. Verstynen, and Fang-Cheng Yeh. "Diffusion Capillary Phantom vs. Human Data: Outcomes for Reconstruction Methods Depend on Evaluation Medium." Frontiers in Neuroscience 10 (2016): 407. 
  • Kini, Lohith G., Ilya M. Nasrallah, Carlos Coto, Lindsay C. Ferraro, and Kathryn A. Davis. "Advanced structural multimodal imaging of a patient with subcortical band heterotopia." Epilepsia Open 1, no. 3-4 (2016): 152-155.
  • Graham L. Baum et al., "Modular Segregation of Structural Brain Networks Supports the Development of Executive Function in Youth." arXiv preprint arXiv:1608.03619 (2016).
  • Sizemore, Ann, Chad Giusti, Richard F. Betzel, and Danielle S. Bassett. "Closures and Cavities in the Human Connectome." arXiv preprint arXiv:1608.03520 (2016). 
  • Lupica, Rosaria, Enricomaria Mormina, Antonio Lacquaniti, Domenico Trimboli, Biagio Bianchimano, Silvia Marino, Placido Bramanti, Marcello Longo, Michele Buemi, and Francesca Granata. "3 Tesla-Diffusion Tensor Imaging in Autosomal Dominant Polycystic Kidney Disease: The Nephrologist's Point of View." Nephron 134, no. 2 (2016): 73-80.
  • Paquette, Michael, Guillaume Gilbert, and Maxime Descoteaux. "Optimal DSI reconstruction parameter recommendations: Better ODFs and better connectivity." NeuroImage 142 (2016): 1-13. 
  • Taylor, Peter Neal, and Rob Forsyth. "Heterogeneity of trans-callosal structural connectivity and effects on resting state subnetwork integrity may underlie both wanted and unwanted effects of therapeutic corpus callostomy." NeuroImage: Clinical 12 (2016): 341-347. 
  • Lichenstein, Sarah D., Timothy Verstynen, and Erika E. Forbes. "Adolescent brain development and depression: A case for the importance of connectivity of the anterior cingulate cortex." Neuroscience & Biobehavioral Reviews 70 (2016): 271-287.
  • Gu, Shi, Matthew Cieslak, Benjamin Baird, Sarah F. Muldoon, Scott T. Grafton, Fabio Pasqualetti, and Danielle S. Bassett. "The Energy Landscape of Neurophysiological Activity Implicit in Brain Network Structure." arXiv preprint arXiv:1607.01959 (2016).
  • Betzel, Richard F., Shi Gu, John D. Medaglia, Fabio Pasqualetti, and Danielle S. Bassett. "Optimally controlling the human connectome: the role of network topology." Scientific Reports 6 (2016).
  • Kahn, Ari E., Marcelo G. Mattar, Jean M. Vettel, Nicholas F. Wymbs, Scott T. Grafton, and Danielle S. Bassett. "Structural pathways supporting swift acquisition of new visuomotor skills." Cerebral cortex (2016).
  • Medaglia, John D., Shi Gu, Fabio Pasqualetti, Rebecca L. Ashare, Caryn Lerman, Joseph Kable, and Danielle S. Bassett. "Cognitive Control in the Controllable Connectome." arXiv preprint arXiv:1606.09185 (2016).
  • Tang, Evelyn, Chad Giusti, Graham Baum, Shi Gu, Ari E. Kahn, David Roalf, Tyler M. Moore et al. "Structural drivers of diverse neural dynamics and their evolution across development." arXiv preprint arXiv:1607.01010 (2016). 
  • Muraskin, Jordan, Sonam Dodhia, Gregory Lieberman, Javier O. Garcia, Timothy Verstynen, Jean M. Vettel, Jason Sherwin, and Paul Sajda. "Brain dynamics of post‐task resting state are influenced by expertise: Insights from baseball players." Human Brain Mapping 37, no. 12 (2016): 4454-4471.
  • Christidi, Foteini, Efstratios Karavasilis, Kostantinos Samiotis, Sotirios Bisdas, and Nikolaos Papanikolaou. "Fiber tracking: A qualitative and quantitative comparison between four different software tools on the reconstruction of major white matter tracts." European Journal of Radiology Open 3 (2016): 153-161.
  • Wong, N. M. L., H-L. Liu, C. Lin, C-M. Huang, Y-Y. Wai, S-H. Lee, and T. M. C. Lee. "Loneliness in late-life depression: structural and functional connectivity during affective processing."Psychological Medicine (2016): 1-15. 
  • Chen, Vincent Chin-Hung, Chao-Yu Shen, Sophie Hsin-Yi Liang, Zhen-Hui Li, Yeu-Sheng Tyan, Yin-To Liao, Yin-Chen Huang, Yena Lee, Roger S. McIntyre, and Jun-Cheng Weng. "Assessment of abnormal brain structures and networks in major depressive disorder using morphometric and connectome analyses." Journal of Affective Disorders 205 (2016): 103-111.
  • Ye, Chuyang, Jiachen Zhuo, Rao P. Gullapalli, and Jerry L. Prince. "Estimation of fiber orientations using neighborhood information." Medical image analysis 32 (2016): 243-256.
  • Yamada, Yasunori, Hoshinori Kanazawa, Sho Iwasaki, Yuki Tsukahara, Osuke Iwata, Shigehito Yamada, and Yasuo Kuniyoshi. "An Embodied Brain Model of the Human Foetus." Scientific Reports 6 (2016): 27893.
  • Barredo, Jennifer, Timothy D. Verstynen, and David Badre. "Organization of cortico-cortical pathways supporting memory retrieval across subregions of the left ventrolateral prefrontal cortex." Journal of Neurophysiology (2016): jn-00157.
  • Liu, Kai, Teng Zhang, Qing Zhang, Yueji Sun, Jianlin Wu, Yi Lei, Winnie CW Chu, Vincent Chung Tong Mok, Defeng Wang, and Lin Shi. "Characterization of the fiber connectivity profile of the cerebral cortex in schizotypal personality disorder: A pilot study." Frontiers in Psychology 7 (2016): 809. 
  • Jeong, Jeong‐Won, Senthil Sundaram, Michael E. Behen, and Harry T. Chugani. "Relationship between genotype and arcuate fasciculus morphology in six young children with global developmental delay: Preliminary DTI stuy." Journal of Magnetic Resonance Imaging 44, no. 6 (2016): 1504-1512.
  • Güngör, Abuzer, Serhat Baydin, Erik H. Middlebrooks, Necmettin Tanriover, Cihan Isler, and Albert L. Rhoton Jr. "The white matter tracts of the cerebrum in ventricular surgery and hydrocephalus." Journal of Neurosurgery (2016): 1-27. 
  • Kujoth, Gregory C., Gabriel F. Neves, Ulas Cikla, Erinc Akture, Kutluay Uluc, Chihwa Song, Tomer Hananya, Alireza Sadighi, Peter Ferrazzano, and Mustafa K. Baskaya. "Monitoring Ischemic Cerebral Injury in Spontaneously Hypertensive Rats by Diffusion Tensor Imaging." Turkish neurosurgery 26, no. 4 (2016).
  • Aojula, Anuriti, Hannah Botfield, James Patterson McAllister, Ana Maria Gonzalez, Osama Abdullah, Ann Logan, and Alexandra Sinclair. "Diffusion tensor imaging with direct cytopathological validation: characterisation of decorin treatment in experimental juvenile communicating hydrocephalus." Fluids and Barriers of the CNS 13, no. 1 (2016): 1.
  • Wu, Yupeng, Dandan Sun, Yong Wang, Yunjie Wang, and Yibao Wang. "Tracing short connections of the temporo-parieto-occipital region in the human brain using diffusion spectrum imaging and fiber dissection." Brain research 1646 (2016): 152-159. 
  • Fernandes-Cabral, David T., Georgios A. Zenonos, Ronald L. Hamilton, Sandip S. Panesar, and Juan C. Fernandez-Miranda. "High-definition fiber tractography in the evaluation and surgical planning of Lhermitte-Duclos disease: a case report." World neurosurgery 92 (2016): 587-e9. 
  • Yoshino, Masanori, Kumar Abhinav, Fang-Cheng Yeh, Sandip Panesar, David Fernandes, Sudhir Pathak, Paul A. Gardner, and Juan C. Fernandez-Miranda. "Visualization of cranial nerves using high-definition fiber tractography." Neurosurgery 79, no. 1 (2016): 146-165. 
  • Su, Chia-Hao, Ching-Yi Tsai, Alice YW Chang, Julie YH Chan, and Samuel HH Chan. "MRI/DTI of the Brain Stem Reveals Reversible and Irreversible Disruption of the Baroreflex Neural Circuits: Clinical Implications." Theranostics 6, no. 6 (2016): 837. 
  • Zhang, Tuo, Dajiang Zhu, Xi Jiang, Shu Zhang, Zhifeng Kou, Lei Guo, and Tianming Liu. "Group-wise consistent cortical parcellation based on connectional profiles." Medical image analysis 32 (2016): 32-45.
  • Taylor, Erik N., Matthew P. Hoffman, David Y. Barefield, George E. Aninwene, Aurash D. Abrishamchi, Thomas L. Lynch, Suresh Govindan et al. "Alterations in Multi‐Scale Cardiac Architecture in Association With Phosphorylation of Myosin Binding Protein‐C." Journal of the American Heart Association 5, no. 3 (2016): e002836. 
  • Meola, Antonio, Fang-Cheng Yeh, Wendy Fellows-Mayle, Jared Weed, and Juan C. Fernandez-Miranda. "Human connectome-based tractographic atlas of the brainstem connections and surgical approaches." Neurosurgery 79, no. 3 (2016): 437-455. 
  • Cadenas-Sánchez, Cristina, José Mora-González, Jairo H. Migueles, Miguel Martín-Matillas, José Gómez-Vida, María Victoria Escolano-Margarit, José Maldonado et al. "An exercise-based randomized controlled trial on brain, cognition, physical health and mental health in overweight/obese children (ActiveBrains project): Rationale, design and methods." Contemporary clinical trials 47 (2016): 315-324. 
  • Donos, Cristian, Mihai Dragoş Mălîia, Ioana Mîndruţă, Irina Popa, Mirela Ene, Bogdan Bălănescu, Ana Ciurea, and Andrei Barborica. "A connectomics approach combining structural and effective connectivity assessed by intracranial electrical stimulation." Neuroimage 132 (2016): 344-358.
  • Leng, Bing, Siyuan Han, Yijun Bao, Hongliang Zhang, Yong Wang, Yupeng Wu, and Yibao Wang. "The uncinate fasciculus as observed using diffusion spectrum imaging in the human brain."Neuroradiology (2016): 1-12.
  • Jugé, Lauriane, Alice C. Pong, Andre Bongers, Ralph Sinkus, Lynne E. Bilston, and Shaokoon Cheng. "Changes in Rat Brain Tissue Microstructure and Stiffness during the Development of Experimental Obstructive Hydrocephalus." PloS one 11, no. 2 (2016): e0148652. 
  • Bolsterlee, Bart, Simon C. Gandevia, and Robert D. Herbert. "Ultrasound imaging of the human medial gastrocnemius muscle: how to orient the transducer so that muscle fascicles lie in the image plane." Journal of biomechanics 49, no. 7 (2016): 1002-1008.
  • Avram, Alexandru V., Joelle E. Sarlls, Alan S. Barnett, Evren Özarslan, Cibu Thomas, M. Okan Irfanoglu, Elizabeth Hutchinson, Carlo Pierpaoli, and Peter J. Basser. "Clinical feasibility of using mean apparent propagator (MAP) MRI to characterize brain tissue microstructure."NeuroImage 2016, 127 (15) 422-34.
  • Schober, Michelle E., Daniela F. Requena, Osama M. Abdullah, T. Charles Casper, Joanna Beachy, Daniel Malleske, and James R. Pauly. "Dietary Docosahexaenoic Acid Improves Cognitive Function, Tissue Sparing, and Magnetic Resonance Imaging Indices of Edema and White Matter Injury in the Immature Rat after Traumatic Brain Injury." Journal of neurotrauma 2016 Feb 15;33(4):390-402.
  • Gallagher, Thomas A., Neil G. Simon, and Michel Kliot. "Visualizing nerve fibers surrounding a brachial plexus tumor using MR diffusion tensor imaging." Neurology 86, no. 6 (2016): 582-583.
  • Wise, Toby, Joaquim Radua, Gareth Nortje, Anthony J. Cleare, Allan H. Young, and Danilo Arnone. "Voxel-based meta-analytical evidence of structural disconnectivity in major depression and bipolar disorder." Biological psychiatry 79, no. 4 (2016): 293-302.
  • Merabet, Lotfi B., Kathryn J. Devaney, Corinna M. Bauer, Aparna Panja, Gena Heidary, and David C. Somers. "Characterizing Visual Field Deficits in Cerebral/Cortical Visual Impairment (CVI) Using Combined Diffusion Based Imaging and Functional Retinotopic Mapping: A Case Study." Frontiers in Systems Neuroscience 10 (2016): 13.
  • Olvet, Doreen M., et al. "A comprehensive examination of white matter tracts and connectometry in major depressive disorder."Depression and anxiety (2016). Jan;33(1):56-65.
  • Fan, Qiuyun, Thomas Witzel, Aapo Nummenmaa, Koene RA Van Dijk, John D. Van Horn, Michelle K. Drews, Leah H. Somerville et al. "MGH–USC Human Connectome Project datasets with ultra-high b-value diffusion MRI." NeuroImage 124 (2016): 1108-1114.
  • Wang, Defeng, Yishan Luo, Vincent CT Mok, Winnie CW Chu, and Lin Shi. "Tractography atlas-based spatial statistics: Statistical analysis of diffusion tensor image along fiber pathways."NeuroImage 125 (2016): 301-310.
  • Yeh, Fang-Cheng, David Badre, and Timothy Verstynen. "Connectometry: A statistical approach harnessing the analytical potential of the local connectome." NeuroImage 125 (2016): 162-171. 
  • Tsai, Hao-Hung, Ling-Yuh Shyu, Seong Yong Lim, Yeu-Sheng Tyan, and Jun-Cheng Weng. "Characterizing longitudinal changes in rabbit brains infected with Angiostrongylus Cantonensis based on diffusion anisotropy." Acta tropica 157 (2016): 1-11.
  • Chiang, H-L., Y-J. Chen, C-Y. Shang, W-YI Tseng, and SS-F. Gau. "Different neural substrates for executive functions in youths with ADHD: a diffusion spectrum imaging tractography study."Psychological medicine (2016): 1-14.
  • Modo M, Hitchens TK, Liu JR, Richardson RM. Detection of aberrant hippocampal mossy fiber connections: Ex vivo mesoscale diffusion MRI and microtractography with histological validation in a patient with uncontrolled temporal lobe epilepsy. Human brain mapping. 2016 Feb 1;37(2):780-95.
  • Chien, Hsiang‐Yun, Susan Shur‐Fen Gau, and Wen‐Yih Isaac Tseng. "Deficient visuospatial working memory functions and neural correlates of the default‐mode network in adolescents with autism spectrum disorder." Autism Research(2016) 2016 Oct;9(10):1058-1072. .
  • Wang, Xuhui, et al. "Subcomponents and connectivity of the superior longitudinal fasciculus in the human brain." Brain Structure and Function 2016 May;221(4):2075-92.
  • Baete, Steven H., Stephen Yutzy, and Fernando E. Boada. "Radial q‐space sampling for DSI." Magnetic resonance in medicine 2016 Sep;76(3):769-80.
  • Yagmurlu, Kaan, Erik H. Middlebrooks, Necmettin Tanriover, and Albert L. Rhoton Jr. "Fiber tracts of the dorsal language stream in the human brain."Journal of neurosurgery 124, no. 5 (2016): 1396-1405.
  • Yoo, Hye Bin, Dirk De Ridder, and Sven Vanneste. "White matter changes in tinnitus: is it all age and hearing loss?." Brain connectivity 6, no. 1 (2016): 84-93.
  • Meola, Antonio, Ayhan Comert, Fang-Cheng Yeh, Sananthan Sivakanthan, and Juan C. Fernandez-Miranda. "The nondecussating pathway of the dentatorubrothalamic tract in humans: human connectome-based tractographic study and microdissection validation." Journal of neurosurgery 124, no. 5 (2016): 1406-1412.


  • Wu, Edzer L., Yun-An Huang, Tzi-Dar Chiueh, and Jyh-Horng Chen. "Single-frequency excitation wideband MRI (SE-WMRI)." Medical physics 42, no. 7 (2015): 4320-4328.
  • Yu, Wenwen, Qiming Lv, Chencheng Zhang, Zhuangming Shen, Bomin Sun, and Zheng Wang. "High-angular diffusion MRI in reward-based psychiatric disorders." In Neurosurgical Treatments for Psychiatric Disorders, pp. 21-34. Springer Netherlands, 2015.
  • Chang, Yu-Ling, Ta-Fu Chen, Yao-Chia Shih, Ming-Jang Chiu, Sui-Hing Yan, and Wen-Yih Isaac Tseng. "Regional Cingulum Disruption, Not Gray Matter Atrophy, Detects Cognitive Changes in Amnestic Mild Cognitive Impairment Subtypes."Journal of Alzheimer's Disease 44, no. 1 (2015): 125-138.
  • Baird, Benjamin, Matthew Cieslak, Jonathan Smallwood, Scott T. Grafton, and Jonathan W. Schooler. "Regional White Matter Variation Associated with Domain-specific Metacognitive Accuracy." Journal of cognitive neuroscience(2015) 27(3):440-52.
  • Wu, Chen‐Hao, Tzung‐Jeng Hwang, Yu‐Jen Chen, Yun‐Chin Hsu, Yu‐Chun Lo, Chih‐Min Liu, Hai‐Gwo Hwu et al. "Altered integrity of the right arcuate fasciculus as a trait marker of schizophrenia: A sibling study using tractography‐based analysis of the whole brain." Human brain mapping 36, no. 3 (2015): 1065-1076.
  • Mormina, Enricomaria, Alessandro Arrigo, Alessandro Calamuneri, Francesca Granata, Angelo Quartarone, Maria F. Ghilardi, Matilde Inglese et al. "Diffusion tensor imaging parameters’ changes of cerebellar hemispheres in Parkinson’s disease." Neuroradiology 57, no. 3 (2015): 327-334.
  • Liu, Chanchan, Rifeng Jiang, Xiyan Yi, Wenzhen Zhu, and Bitao Bu. "Role of diffusion tensor imaging or magnetic resonance spectroscopy in the diagnosis and disability assessment of amyotrophic lateral sclerosis." Journal of the neurological sciences 348, no. 1 (2015): 206-210.
  • Meng, Yuguang, and Xiaodong Zhang. "Transcallosal Connectivity Changes from Infancy to Late Adulthood: An Ex Vivo Diffusion Spectrum Imaging Study of Macaque Brains." Brain connectivity 5, no. 3 (2015): 147-155..
  • Fernández-Miranda, Juan C., Yibao Wang, Sudhir Pathak, Lucia Stefaneau, Timothy Verstynen, and Fang-Cheng Yeh. "Asymmetry, connectivity, and segmentation of the arcuate fascicle in the human brain." Brain Structure and Function 220, no. 3 (2015): 1665-1680.
  • Middlebrooks, Erik H., Kaan Yagmurlu, Jeffrey A. Bennett, and Sharatchandra Bidari. "Normal relationship of the cervicomedullary junction with the obex and olivary bodies: a comparison of cadaveric dissection and in vivo diffusion tensor imaging." Surgical and Radiologic Anatomy 37, no. 5 (2015): 493-497.
  • Tseng, Chieh-En Jane, Yi-Ling Chien, Chih-Min Liu, Hsiao-Lan Sharon Wang, Hai-Gwo Hwu, and Wen-Yih Isaac Tseng. "Altered cortical structures and tract integrity of the mirror neuron system in association with symptoms of schizophrenia."Psychiatry Research: Neuroimaging 231, no. 3 (2015): 286-291.
  • Bolsterlee, Bart, et al. "Comparison of measurements of medial gastrocnemius architectural parameters from ultrasound and diffusion tensor images." Journal of biomechanics 48.6 (2015): 1133-1140.
  • Wang, Yong, Peng Sun, Qing Wang, Kathryn Trinkaus, Robert E. Schmidt, Robert T. Naismith, Anne H. Cross, and Sheng-Kwei Song. "Differentiation and quantification of inflammation, demyelination and axon injury or loss in multiple sclerosis." Brain (2015) 138:1223-38.
  • Presson, Nora, et al. "Quantifying White Matter Structural Integrity With High-Definition Fiber Tracking in Traumatic Brain Injury." Military medicine 180.3S (2015): 109-121.
  • Jarbo, Kevin, and Timothy D. Verstynen. "Converging structural and functional connectivity of orbitofrontal, dorsolateral prefrontal, and posterior parietal cortex in the human striatum." The Journal of Neuroscience 35.9 (2015): 3865-3878.
  • Chien, Hsiang‐Yun, Susan Shur‐Fen Gau, Yung‐Chin Hsu, Yu‐Jen Chen, Yu‐Chun Lo, Yao‐Chia Shih, and Wen‐Yih Isaac Tseng. "Altered Cortical Thickness and Tract Integrity of the Mirror Neuron System and Associated Social Communication in Autism Spectrum Disorder." Autism Research 8, no. 6 (2015): 694-708.
  • Chiang, Huey-Ling, Yu-Jen Chen, Yu-Chun Lo, Wen-Yih Isaac Tseng, and Susan Shur-Fen Gau. "Altered white matter tract property related to impaired focused attention, sustained attention, cognitive impulsivity and vigilance in attention-deficit/hyperactivity disorder." Journal of psychiatry & neuroscience: JPN 40, no. 5 (2015): 325.
  • Bonfield, Christopher M., Lesley M. Foley, Shinjini Kundu, Wendy Fellows-Mayle, T. Kevin Hitchens, Gustavo K. Rohde, Ramesh Grandhi, and Mark P. Mooney. "The influence of surgical correction on white matter microstructural integrity in rabbits with familial coronal suture craniosynostosis."Neurosurgical focus 38, no. 5 (2015): E3.
  • Presson, Nora, Sue R. Beers, Lisa Morrow, Lauren M. Wagener, William A. Bird, Gina Van Eman, Deepa Krishnaswamy et al. "An exploratory analysis linking neuropsychological testing to quantification of tractography using High Definition Fiber Tracking (HDFT) in military TBI." Brain imaging and behavior 9, no. 3 (2015): 484-499.
  • Tran G, Shi Y. Fiber orientation and compartment parameter estimation from multi-shell diffusion imaging. Medical Imaging, IEEE Transactions on. 2015 Nov;34(11):2320-32.
  • Calabrese, Evan, et al. "A diffusion tensor MRI atlas of the postmortem rhesus macaque brain." NeuroImage 117 (2015): 408-416.
  • Faraji, Amir H., Kumar Abhinav, Kevin Jarbo, Fang-Cheng Yeh, Samuel S. Shin, Sudhir Pathak, Barry E. Hirsch, Walter Schneider, Juan C. Fernandez-Miranda, and Robert M. Friedlander. "Longitudinal evaluation of corticospinal tract in patients with resected brainstem cavernous malformations using high-definition fiber tractography and diffusion connectometry analysis: preliminary experience." Journal of neurosurgery 123, no. 5 (2015): 1133-1144.
  • Chen, Yu‐Jen, et al. "Automatic whole brain tract‐based analysis using predefined tracts in a diffusion spectrum imaging template and an accurate registration strategy." Human brain mapping 36.9 (2015): 3441-3458.
  • Hsu, Yung‐Chin, et al. "NTU‐DSI‐122: A diffusion spectrum imaging template with high anatomical matching to the ICBM‐152 space." Human brain mapping 36.9 (2015): 3528-3541.
  • Sepehrband, Farshid, et al. "Brain tissue compartment density estimated using diffusion‐weighted MRI yields tissue parameters consistent with histology."Human brain mapping 36.9 (2015): 3687-3702.
  • Berns, Gregory S., Peter F. Cook, Sean Foxley, Saad Jbabdi, Karla L. Miller, and Lori Marino. "Diffusion tensor imaging of dolphin brains reveals direct auditory pathway to temporal lobe." In Proc. R. Soc. B, vol. 282, no. 1811, p. 20151203. The Royal Society, 2015.
  • Broce, Iris, et al. "Fiber tracking of the frontal aslant tract and subcomponents of the arcuate fasciculus in 5–8-year-olds: Relation to speech and language function." Brain and language 149 (2015): 66-76.
  • Shen, Chao-Yu, et al. "Quantitative evaluation of rabbit brain injury after cerebral hemisphere radiation exposure using generalized q-sampling imaging."PloS one 10.7 (2015): e0133001.
  • Rofey, Dana L., et al. "Brain volume and white matter in youth with type 2 diabetes compared to obese and normal weight, non-diabetic peers: A pilot study." International Journal of Developmental Neuroscience 46 (2015): 88-91.
  • Grover, Vijay PB, Mary ME Crossey, Julie A. Fitzpatrick, Brian K. Saxby, Roberta Shaw, Adam D. Waldman, Marsha Y. Morgan, and Simon D. Taylor-Robinson. "Quantitative magnetic resonance imaging in patients with cirrhosis: a cross-sectional study." Metabolic Brain Disease(2015): 1-11.
  • Mueller, Bryon A., et al. "Diffusion MRI and its Role in Neuropsychology."Neuropsychology review 25.3 (2015): 250-271.
  • Gallagher, Thomas Anthony, Neil G. Simon, and Michel Kliot. "Diffusion tensor imaging to visualize axons in the setting of nerve injury and recovery."Neurosurgical focus 39.3 (2015): E10.
  • Lim, Seong Yong, et al. "New Insights into the Developing Rabbit Brain Using Diffusion Tensor Tractography and Generalized q-Sampling MRI." PloS one10.3 (2015): e0119932.
  • Taylor, Erik N., et al. "Patterns of Intersecting Fiber Arrays Revealed in Whole Muscle with Generalized Q-Space Imaging." Biophysical journal 108.11 (2015): 2740-2749..
  • Raval, Shailesh B., Tiejun Zhao, Narayanan Krishnamurthy, Tamer S. Ibrahim, and Vijay S. Gorantla. "Exploring Peripheral Nerve, Macro and Micro-Vasculature Imaging Applications at Ultra-High Field MRI." Plastic and reconstructive surgery 136, no. 4S (2015): 20.
  • Meola, Antonio, Ayhan Comert, Fang‐Cheng Yeh, Lucia Stefaneanu, and Juan C. Fernandez‐Miranda. "The controversial existence of the human superior fronto‐occipital fasciculus: Connectome‐based tractographic study with microdissection validation." Human brain mapping 36, no. 12 (2015): 4964-4971.
  • Gu, Shi, Fabio Pasqualetti, Matthew Cieslak, Qawi K. Telesford, B. Yu Alfred, Ari E. Kahn, John D. Medaglia et al. "Controllability of structural brain networks." Nature communications 6 (2015).
  • Cieslak, Matthew, Roger J. Ingham, Janis C. Ingham, and Scott T. Grafton. "Anomalous White Matter Morphology in Adults Who Stutter." Journal of Speech, Language, and Hearing Research 58, no. 2 (2015): 268-277.
  • Taylor, Peter Neal, et al. "Optimal control based seizure abatement using patient derived connectivity." Frontiers in Neuroscience 9 (2015): 202.
  • Glenn, G. Russell, et al. "Optimization of white matter fiber tractography with diffusional kurtosis imaging." NMR in Biomedicine 28.10 (2015): 1245-1256.
  • Fan, Yang-teng, Keh-chung Lin, Ho-ling Liu, Yao-liang Chen, and Ching-yi Wu. "Changes in structural integrity are correlated with motor and functional recovery after post-stroke rehabilitation." Restorative neurology and neuroscience 33, no. 6 (2015): 835-844.
  • Lischke, A., et al. "Structural alterations in white-matter tracts connecting (para-) limbic and prefrontal brain regions in borderline personality disorder."Psychological medicine 45.15 (2015): 3171-3180.
  • Basu, Anna P., et al. "Structural connectivity in a paediatric case of anarchic hand syndrome." BMC Neurology 15.1 (2015): 234.
  • Goncalves, Maria B., et al. "Neuronal RARβ Signaling Modulates PTEN Activity Directly in Neurons and via Exosome Transfer in Astrocytes to Prevent Glial Scar Formation and Induce Spinal Cord Regeneration." The Journal of Neuroscience 35.47 (2015): 15731-15745.
  • Liu, Siqi, Nur Hadi, Sidong Liu, Sonia Pujol, Ron Kikinis, Fan Zhang, Dagan Feng, and Weidong Cai. "Content-based retrieval of brain diffusion magnetic resonance image." In Multimodal Retrieval in the Medical Domain, pp. 54-60. Springer International Publishing, 2015.
  • Daianu, Madelaine, Russell E. Jacobs, Tara M. Weitz, Terrence C. Town, and Paul M. Thompson. "Multi-Shell Hybrid Diffusion Imaging (HYDI) at 7 Tesla in TgF344-AD Transgenic Alzheimer Rats."PloS one 10, no. 12 (2015): e0145205.


  • Lin, Yi-Cheng, et al. "Cingulum Correlates of Cognitive Functions in Patients with Mild Cognitive Impairment and Early Alzheimer’s Disease: A Diffusion Spectrum Imaging Study." Brain topography 27.3 (2014): 393-402.
  • Teipel, Stefan J., et al. "Decline of fiber tract integrity over the adult age range: A diffusion spectrum imaging study." Journal of Magnetic Resonance Imaging 40.2 (2014): 348-359..
  • Teipel, Stefan J., et al. "Fractional anisotropy changes in Alzheimer’s disease depend on the underlying fiber tract architecture: a multiparametric DTI study using joint independent component analysis." J. Alzheimers Dis 41 (2014): 69-83.
  • K. Abhinav, S, Pathak, M. Richardson, J. Engh, P. Gardner, F-C. Yeh, R. Friedlander, J.  Fernandez-Miranda, Juan, "Application of High Definition Fiber Tractography (HDFT) in Management of Supratentorial Cavernous Malformations: A Combined Qualitative and Quantitative Approach", Neurosurgery, 2014 Jun;74(6):668-80.
  • Wu YH, Gau SS, Lo YC, Tseng WY, "White matter tract integrity of frontostriatal circuit in attention deficit hyperactivity disorder: Association with attention performance and symptoms," Hum Brain Mapp. 2014 Jan;35(1):199-212
  • M Cieslak, ST Grafton, "Local termination pattern analysis: a tool for comparing white matter morphology", Brain Imaging and Behavior, 2014 Jun;8(2):292-9.
  • A Ersoz, VE Arpinar, S Dreyer, LT Muftuler, "Quantitative analysis of the efficacy of gradient table correction on improving the accuracy of fiber tractography", Magn Reson Med. 2014 Jul;72(1):227-36.
  • Jung KJ, "Removal of partial volume averaging with free water in MR diffusion tensor imaging using inversion recovery for b0 image", Magn Reson Imaging. 2014 Jul;32(6):619-24.
  • Abhinav, Kumar, et al. "Use of diffusion spectrum imaging in preliminary longitudinal evaluation of amyotrophic lateral sclerosis: development of an imaging biomarker." Frontiers in human neuroscience 8 (2014).
  • A Uematsu, A Kitamura, K Iwatsuki, H Uneyama, and T. Tsurugizawa, "Correlation Between Activation of Prelimbic Cortex, the Basolateral Amygdala, and Agranular Insular Cortex During Taste Memory Formation", Cerebral Cortex, 2014.
  • Lin HY, Gau SS, Huang-Gu SL, Shang CY, Wu YH, Tseng WY., "Neural substrates of behavioral variability in attention deficit hyperactivity disorder: based on ex-Gaussian reaction time distribution and diffusion spectrum imaging tractography.", Psychol Med. 2014 Jun;44(8):1751-64. 
  • Gau SS, Tseng WL, Tseng WY, Wu YH, Lo YC,"Association between microstructural integrity of frontostriatal tracts and school functioning: ADHD symptoms and executive function as mediators." Psychol Med. 2014 Jul 30:1-15.
  • Kent BP, Rinaldo A, Yeh F-C, Verstynen T, "Mapping Topographic Structure in White Matter Pathways with Level Set Trees". PLoS ONE 9(4): e93344. doi:10.1371/journal.pone.0093344, 2014.
  • K. Abhinav, F-C. Yeh, S. Pathak, R. M. Friedlander, and J. C. Fernandez-Miranda, “Advanced Diffusion MRI Fiber Tracking in Neurosurgical and Neurodegenerative Disorders and Neuroanatomical studies: A review”, Biochim Biophys Acta. 2014 Nov;1842(11):2286-2297.
  • Bauer, Corinna M., et al. "Abnormal white matter tractography of visual pathways detected by high-angular-resolution diffusion imaging (HARDI) corresponds to visual dysfunction in cortical/cerebral visual impairment." Journal of American Association for Pediatric Ophthalmology and Strabismus 18.4 (2014): 398-401.
  • Meng Y, Zhang X., "In vivo diffusion spectrum imaging of non-human primate brain: initial experience in transcallosal fiber examination.", Quant Imaging Med Surg. 2014 Apr;4(2):129-35.
  • T. D. Verstynen, "The organization and dynamics of corticostriatal pathways link the medial orbitofrontal cortex to future behavioral responses", J Neurophysiol. 2014 Nov 15;112(10):2457-69.
  • Wu et al. "Reduced structural integrity and functional lateralization of the dorsal language pathway correlate with hallucinations in schizophrenia: a combined diffusion spectrum imaging and functional magnetic resonance imaging study", Psychiatry Res. 2014 Dec 30;224(3):303-10. 
  • Middlebrooks, Erik H. "Visualization of the pyramidal decussation utilizing diffusion tensor imaging: a feasibility study utilizing generalized q-sampling imaging." Research (2014).
  • Fan, Qiuyun, et al. "Investigating the capability to resolve complex white matter structures with high b-value diffusion magnetic resonance imaging on the MGH-USC Connectom scanner." Brain connectivity 4.9 (2014): 718-726.
  • Mani, Merry, et al. "Fast iterative algorithm for the reconstruction of multishot non‐cartesian diffusion data." Magnetic Resonance in Medicine (2014).
  • Huang Y-C, Tsai Y-H, Lee J-D, Weng H-H, Lin L-C, et al. (2014) Hemodynamic Factors May Play a Critical Role in Neurological Deterioration Occurring within 72 hrs after Lacunar Stroke. PLoS ONE 9(10): e108395. doi:10.1371/journal.pone.0108395
  • Wu, Fang, et al. "Urokinase-type plasminogen activator promotes dendritic spine recovery and improves neurological outcome following ischemic stroke." The Journal of Neuroscience 34.43 (2014): 14219-14232.
  • G La Fata, A Gärtner, N Domínguez-Iturza. et al. "FMRP regulates multipolar to bipolar transition affecting neuronal migration and cortical circuitry", Nat Neurosci. 2014 Dec;17(12):1693-700.
  • Alessandro Arrigo, Enricomaria Mormina, Giuseppe Pio Anastasi, al.,"Constrained Spherical Deconvolution analysis of the limbic network in human, with emphasis on a direct cerebello-limbic pathway", Front Hum Neurosci. 2014 Dec 8;8:987. 


  • Kuo, Li-Wei, et al. "Diffusion spectrum MRI using body-centered-cubic and half-sphere sampling schemes." Journal of neuroscience methods 212.1 (2013): 143-155.
  • Pyles, John A., et al. "Explicating the face perception network with white matter connectivity."PLoS One 8.4 (2013): e61611.
  • Shang, C. Y., et al. "Disturbed microstructural integrity of the frontostriatal fiber pathways and executive dysfunction in children with attention deficit hyperactivity disorder." Psychological medicine 43.05 (2013): 1093-1107.
  • Pan, M-K., et al. "Microstructural integrity of cerebral fiber tracts in hereditary spastic paraparesis with SPG11 mutation." American Journal of Neuroradiology 34.5 (2013): 990-996.
  • Jeong, Jeong‐Won, et al. "Independent component analysis tractography combined with a ball–stick model to isolate intravoxel crossing fibers of the corticospinal tracts in clinical diffusion MRI."Magnetic Resonance in Medicine 70.2 (2013): 441-453.
  • Tsai, Ching-Yi, et al. "Visualizing oxidative stress-induced depression of cardiac vagal baroreflex by MRI/DTI in a mouse neurogenic hypertension model." NeuroImage 82 (2013): 190-199.
  • Molinuevo, Jose L., et al. Early Diagnosis and Intervention in Predementia Alzheimer's Disease, An Issue of Medical Clinics. Vol. 97. No. 3. Elsevier Health Sciences, 2013.
  • Yeh, Fang-Cheng, Pei-Fang Tang, and Wen-Yih Isaac Tseng. "Diffusion MRI connectometry automatically reveals affected fiber pathways in individuals with chronic stroke." NeuroImage: Clinical 2 (2013): 912-921.
  • Koo, Bang‐Bon, et al. "Hippocampal network connections account for differences in memory performance in the middle‐aged rhesus monkey."Hippocampus 23.12 (2013): 1179-1188.
  • Y.-C. Lo, T.-L. Chou, L.-Y. Fan, S. S.-F. Gau, Y.-N. Chiu, W.-Y. I. Tseng, "Altered Structure–Function Relations of Semantic Processing in Youths with High-Functioning Autism: A Combined Diffusion and Functional MRI Study", Autism Research, 2013 Dec;6(6):561-70.
  • F-C. Yeh and W-Y. I. Tseng, “Sparse Solution of Fiber Orientation Distribution Function by Diffusion Decomposition”, PLOS One, 2013, 8(10): e75747.
  • Y. Wang, J. C. Fernández-Miranda, T. Verstynen, S. Pathak, W. Schneider, F-C. Yeh, "Rethinking the role of the middle longitudinal fascicle in language and auditory pathways", Cerebral Cortex, 2013 Oct;23(10):2347-56
  • Zhang, Hongliang, et al. "Differences between generalized q-sampling imaging and diffusion tensor imaging in the preoperative visualization of the nerve fiber tracts within peritumoral edema in brain." Neurosurgery 73.6 (2013): 1044-1053.
  • Yeh F-C, Verstynen TD, Wang Y, Fernández-Miranda JC, Tseng W-YI (2013) "Deterministic Diffusion Fiber Tracking Improved by Quantitative Anisotropy." PLoS ONE 8(11): e80713. doi:10.1371/journal.pone.0080713
  • CY Shen, YS Tyan, JC Weng "Longitudinal Anatomical and Diffusion Magnetic Resonance Imaging Evaluation of Rabbit Brain Injury After Cerebral Hemisphere Radiation Exposure", Journal of Neuroscience and Neuroengineering, Volume 2, Number 4, August 2013 , pp. 355-363(9).


  • Verstynen, Timothy D., et al. "Microstructural organizational patterns in the human corticostriatal system." Journal of neurophysiology 107.11 (2012): 2984-2995.
  • Jarbo, Kevin, Timothy Verstynen, and Walter Schneider. "In vivo quantification of global connectivity in the human corpus callosum."Neuroimage 59.3 (2012): 1988-1996. 
  • Kim, Young Beom, et al. "Connectivity of thalamo‐cortical pathway in rat brain: combined diffusion spectrum imaging and functional MRI at 11.7 T."NMR in Biomedicine 25.7 (2012): 943-952.
  • Greenberg, Adam S., et al. "Visuotopic cortical connectivity underlying attention revealed with white-matter tractography." The Journal of Neuroscience 32.8 (2012): 2773-2782.
  • Shin, Samuel S., et al. "High-definition fiber tracking for assessment of neurological deficit in a case of traumatic brain injury: finding, visualizing, and interpreting small sites of damage: Case report." Journal of neurosurgery 116.5 (2012): 1062-1069.
  • Fernandez-Miranda, Juan C., et al. "High-definition fiber tractography of the human brain: neuroanatomical validation and neurosurgical applications." Neurosurgery 71.2 (2012): 430-453. 
  • Po, Chrystelle, et al. "White matter reorganization and functional response after focal cerebral ischemia in the rat." (2012): e45629.
  • Phillips, Jeffrey S., et al. "Co-analysis of Brain Structure and Function using fMRI and Diffusion-weighted Imaging." Journal of visualized experiments: JoVE 69 (2012).
  • Jeong, Jeong-Won, et al. "Altered white matter structure of the dentatorubrothalamic pathway in children with autistic spectrum disorders." The Cerebellum 11.4 (2012): 957-971.
  • Vedantam, A., et al. "Diffusion tensor imaging and tractography in brown-sequard syndrome." Spinal cord 50.12 (2012): 928-930.


  • Chiu, Chen-Huan, et al. "White matter abnormalities of fronto-striato-thalamic circuitry in obsessive–compulsive disorder: a study using diffusion spectrum imaging tractography."Psychiatry Research: Neuroimaging 192.3 (2011): 176-182.
  • Lo, Yu-Chun, et al. "The loss of asymmetry and reduced interhemispheric connectivity in adolescents with autism: a study using diffusion spectrum imaging tractography." Psychiatry Research: Neuroimaging 192.1 (2011): 60-66.
  • Yeh, Fang-Cheng, Van Jay Wedeen, and Wen-Yih Isaac Tseng. "Estimation of fiber orientation and spin density distribution by diffusion deconvolution." Neuroimage 55.3 (2011): 1054-1062.
  • Yeh, Fang-Cheng, and Wen-Yih Isaac Tseng. "NTU-90: a high angular resolution brain atlas constructed by q-space diffeomorphic reconstruction." Neuroimage 58.1 (2011): 91-99.
  • Loh, Kok Beng, et al. "A Hot Cross Bun sign from diffusion tensor imaging and tractography perspective." Neurology India 59.2 (2011): 266.
  • Verstynen, Timothy, et al. "In vivo mapping of microstructural somatotopies in the human corticospinal pathways." Journal of neurophysiology 105.1 (2011): 336-346.
  • Wang, Yong, et al. "Quantification of increased cellularity during inflammatory demyelination."Brain 134.12 (2011): 3590-3601.


  • Tang, P-F., et al. "Tract-specific and region of interest analysis of corticospinal tract integrity in subcortical ischemic stroke: reliability and correlation with motor function of affected lower extremity." American Journal of Neuroradiology31.6 (2010): 1023-1030.
  • A. T. Van, C. Granziera and R. Bammer, "An introduction to model-independent diffusion magnetic resonance imaging," Top Magn Reson Imaging 21, 339-354 (2010).
  • Yeh, Fang-Cheng, Van Jay Wedeen, and Wen-Yih Isaac Tseng. "Generalized-sampling imaging."Medical Imaging, IEEE Transactions on 29.9 (2010): 1626-1635.
  • Liu, I-Chao, et al. "The microstructural integrity of the corpus callosum and associated impulsivity in alcohol dependence: a tractography-based segmentation study using diffusion spectrum imaging." Psychiatry Research: Neuroimaging184.2 (2010): 128-134. 
  • Fernandez-Miranda, Juan C., et al. "High-definition fiber tracking guidance for intraparenchymal endoscopic port surgery: Technical note." Journal of neurosurgery 113.5 (2010): 990-999..

Laboratories using DSI Studio

If you would like to have your lab added/removed, please let me know (
1. Advanced Biomedical MRI Lab at National Taiwan University Hospital (
2. CoAx Lab at Carnegie Mellon University (
3. Lab of Neurocognitive Development of the Department of Psychiatry at the University of Pittsburgh Medical Center (
4. Brain Body Stress Lab at University of Pittsburgh (
5. Walt Schneider Lab at University of Pittsburgh (
6. Action Lab at University of California Santa Barbara (
7. NeuroImaging Network (NIN), Universal Scientific Education and Research Network (USERN), Tehran, Iran (

Media coverage

November 9, 2012
CBS Pittsburgh

March 2, 2012
Pittsburgh Post-Gazette

November 1, 2014
The Scientist Magazine®

August 03, 2015e
Discover Magazine

Fang-Cheng Yeh,
Jan 7, 2016, 12:33 PM
Fang-Cheng Yeh,
Dec 2, 2015, 4:06 PM
Fang-Cheng Yeh,
Dec 2, 2015, 3:56 PM
Fang-Cheng Yeh,
Dec 2, 2015, 4:06 PM